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Methodology reference guide

A detailed reference guide to methodological tools for evidence-based medicine and scientific peer review. Each entry explains what the tool is, what it assesses, its structure, and where it is used.

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About this guide

Tools are grouped by purpose

Some tools assess risk of bias in individual studies, others assess systematic review quality, others set reporting standards, and GRADE assesses certainty across a body of evidence. The reference specifies editions, including historical ones. Before preparing a report, check the latest edition with the primary source: for example, CONSORT 2025 updates CONSORT 2010. Describing an edition does not mean that the platform's automated assessment uses that new edition.

Risk of bias in RCTs 1

RoB 2

Risk of Bias 2 (Cochrane Risk of Bias tool for randomized trials, version 2), 2019
What it is

A Cochrane tool for assessing risk of bias in randomised controlled trials (RCTs). It replaced the original RoB tool (RoB 1).

What it assesses

Risk of bias for the specific outcome being assessed, rather than for the study as a whole, through answers to signalling questions.

Structure / domains
  • Domain 1 — the randomisation process.
  • Domain 2 — deviations from intended interventions.
  • Domain 3 — missing outcome data.
  • Domain 4 — measurement of the outcome.
  • Domain 5 — selection of reported results (selective reporting).
Where it is used

Systematic reviews and meta-analyses of RCTs, primarily Cochrane reviews; clinical guidelines.

Overall judgement for each outcome: low risk / some concerns / high risk.
More about RoB 2 →

Non-randomised and observational studies 4

ROBINS-I

Risk Of Bias In Non-randomized Studies — of Interventions, 2016
What it is

A Cochrane tool for assessing risk of bias in non-randomised studies of the effects of interventions. It is built around the concept of a target trial: a hypothetical RCT against which the observational study is compared.

What it assesses

Risk of bias across 7 domains, including biases arising before, during, and after the intervention.

Structure / domains
  • Confounding factors (confounding).
  • Selection of participants into the study.
  • Classification of interventions.
  • Deviations from intended interventions.
  • Missing data.
  • Measurement of outcomes.
  • Selection of reported results.
Where it is used

Cohort, case–control, and quasi-experimental studies of intervention effects; reviews that include non-randomised data.

Overall judgement: low / moderate / serious / critical risk, or no information.
More about ROBINS-I →

ROBINS-E

Risk Of Bias In Non-randomized Studies — of Exposures, 2023
What it is

A counterpart to ROBINS-I adapted for studies of exposures rather than interventions. It is used when exposure cannot be assigned, such as harmful factors, lifestyle, or the environment.

What it assesses

Risk of bias in observational studies of exposure–outcome associations.

Structure / domains
  • Confounding factors.
  • Measurement of exposure.
  • Selection of participants.
  • Post-exposure interventions.
  • Missing data.
  • Measurement of the outcome.
  • Selection of reported results.
Where it is used

Environmental epidemiology, toxicology, hygiene, studies of occupational and environmental risks; systematic reviews of exposures.

Newcastle–Ottawa

Newcastle–Ottawa Scale (NOS)
What it is

A simple star-based scale for assessing the quality of observational studies. It is one of the most popular tools because it is quick to apply.

What it assesses

Methodological quality of cohort and case–control studies.

Structure / domains
  • Selection — sample representativeness and definition of groups.
  • Comparability — control of confounding factors.
  • Outcome / Exposure — quality of outcome or exposure assessment.
Where it is used

Systematic reviews and meta-analyses of observational studies; often used as an alternative to the more complex ROBINS-I.

The assessment is expressed as stars, usually with a maximum of 9. Separate versions are available for cohort and case–control studies, along with an adaptation for cross-sectional studies.
More about Newcastle–Ottawa →

MINORS

Methodological Index for Non-Randomized Studies, 2003
What it is

An index of methodological quality for non-randomised studies, originally developed for surgery.

What it assesses

Methodological quality of non-comparative and comparative non-randomised studies.

Structure / domains
  • 8 items for non-comparative studies (aim, patient inclusion, data collection, endpoints, objectivity of assessment, follow-up duration, loss to follow-up, and sample size calculation).
  • +4 additional items for comparative studies (adequacy of the control group, concurrent groups, baseline comparability, and statistical analysis).
Where it is used

Surgery and other fields where RCTs are difficult to conduct; systematic reviews of non-randomised interventions.

Each item: 0 (not reported) / 1 (reported, but inadequate) / 2 (adequate). Maximum 16 (non-comparative) or 24 (comparative).

Systematic reviews and other review articles 2

AMSTAR-2

A MeaSurement Tool to Assess systematic Reviews, version 2, 2017
What it is

An updated tool for critically appraising systematic reviews themselves. Unlike the first version, it assesses reviews of both RCTs and non-randomised studies.

What it assesses

Methodological quality and reliability of a systematic review.

Structure / domains
  • 16 items, of which 7 are considered critical (for example, protocol registration, search completeness, justification of exclusions, risk of bias in included studies, consideration of risk of bias when interpreting results, and publication bias).
Where it is used

Quality assessment of published systematic reviews; overviews of reviews; clinical guidelines and HTA.

Overall confidence in the review: high / moderate / low / critically low, depending on the number of critical and non-critical weaknesses.
More about AMSTAR-2 →

SANRA

Scale for the Assessment of Narrative Review Articles, 2019
What it is

A short scale for assessing the quality of narrative reviews, which do not follow a strict systematic methodology.

What it assesses

Quality of the presentation and substantiation of a narrative review.

Structure / domains
  • 6 items (justification of the topic's importance, statement of aims/questions, description of the literature search, referencing, scientific reasoning, and presentation of data), each scored on a 0–2 scale.
Where it is used

Journal editors and peer reviewers; authors of narrative reviews; educational purposes.

Diagnostic accuracy 1

QUADAS-2

Quality Assessment of Diagnostic Accuracy Studies, version 2, 2011
What it is

A tool for assessing risk of bias and applicability in diagnostic accuracy studies (comparison of an index test with a reference standard).

What it assesses

Risk of bias and applicability across four domains.

Structure / domains
  • Patient selection.
  • Index test.
  • Reference standard.
  • Patient flow and timing (flow and timing).
Where it is used

Systematic reviews and meta-analyses of diagnostic accuracy; assessment of diagnostic technologies (HTA).

Both risk of bias and applicability are assessed for the first three domains; judgements are low / high / unclear. A further development, QUADAS-C, is available for comparing tests.
More about QUADAS-2 →

Certainty of evidence 1

GRADE

Grading of Recommendations Assessment, Development and Evaluation, since 2004
What it is

A system for assessing the certainty of the body of evidence for each outcome and determining the strength of recommendations, rather than assessing an individual study. It is the de facto standard in clinical guidelines.

What it assesses

Certainty of evidence (high / moderate / low / very low) and strength of recommendations (strong / conditional).

Structure / domains
  • Factors that lower certainty: risk of bias, inconsistency, indirectness, imprecision, and publication bias.
  • Factors that may increase certainty for observational data include a large effect, a dose–response gradient, and all plausible residual confounding that would attenuate the observed association or produce an association where none was observed. See GRADE handbook, section 5.3.3.
  • Presentation in Summary of Findings and Evidence Profile tables.
Where it is used

Development of clinical guidelines, systematic reviews (including Cochrane reviews), health technology assessment, and policy development.

Reporting guidelines 7

PRISMA 2020

Preferred Reporting Items for Systematic reviews and Meta-Analyses, 2020 update (first version 2009)
What it is

The leading reporting standard for systematic reviews and meta-analyses. It is a guide to what a publication should describe, rather than a quality assessment tool.

What it assesses

Completeness and transparency of a review report (not risk of bias).

Structure / domains
  • A 27-item checklist (with an expanded version containing sub-items) covering the title, abstract, introduction, methods, results, discussion, and other information.
  • Study selection flow diagram: identification, screening, and inclusion.
Where it is used

Authors, peer reviewers, and editors of systematic reviews and meta-analyses across all fields of medicine and beyond.

More about PRISMA 2020 →

PRISMA-ScR

PRISMA extension for Scoping Reviews, 2018
What it is

A PRISMA extension for scoping reviews, which aim to map the extent and nature of the literature rather than answer a narrow clinical question.

What it assesses

Completeness of scoping review reporting.

Structure / domains
  • 20 required and 2 optional items adapted to literature mapping (without mandatory risk of bias assessment or synthesis of effects).
Where it is used

Authors of scoping reviews; fields with extensive or heterogeneous literature where an overview of the field is needed.

STROBE

STrengthening the Reporting of OBservational studies in Epidemiology, 2007
What it is

Reporting standard for observational epidemiological studies.

What it assesses

Completeness and transparency of an observational study report.

Structure / domains
  • A 22-item checklist covering the title, introduction, methods, results, and discussion.
  • Separate adaptations are available for cohort, case–control, and cross-sectional designs, along with extensions (STROBE-MR for Mendelian randomisation and others).
Where it is used

Authors and peer reviewers of cohort, case–control, and cross-sectional studies.

CONSORT

CONsolidated Standards Of Reporting Trials, 2010 (major update 2025)
What it is

A reporting standard for randomised controlled trials, specifying which details about an RCT must be included in a publication.

What it assesses

Completeness and transparency of an RCT report.

Structure / domains
  • A 25-item checklist (in the 2010 version) covering the title/abstract, introduction, methods, results, discussion, and other information.
  • Participant flow diagram (enrolment, allocation, follow-up, and analysis).
  • Numerous extensions (for cluster trials, pilot trials, non-inferiority, harms, and others).
Where it is used

Authors, peer reviewers, and journals publishing RCTs.

SPIRIT

Standard Protocol Items: Recommendations for Interventional Trials, 2013
What it is

Guidance on the content of clinical trial protocols. It complements CONSORT: SPIRIT addresses the protocol before the study, and CONSORT addresses the report afterwards.

What it assesses

Completeness of an interventional trial protocol.

Structure / domains
  • A 33-item checklist: administrative information, introduction, methods (participants, interventions, outcomes, and analysis plan), ethics, and dissemination.
Where it is used

Development and review of clinical trial protocols; ethics committees; sponsors and regulators.

CARE

CAse REport guidelines, 2013
What it is

A reporting standard for case reports: detailed descriptions of individual patients.

What it assesses

Completeness and quality of a case report.

Structure / domains
  • A 13-item checklist: title, keywords, abstract, introduction, patient information, clinical findings, timeline, diagnosis, intervention, outcomes, discussion, patient perspective, and informed consent.
Where it is used

Authors and journals publishing case reports and case series.

TRIPOD

Transparent Reporting of a multivariable prediction model for Individual Prognosis Or Diagnosis, 2015 (TRIPOD+AI — 2024)
What it is

A reporting standard for studies that develop or validate multivariable prognostic (prediction) and diagnostic models.

What it assesses

Completeness of a report on the development/validation of a prediction model.

Structure / domains
  • A checklist (22 items in the original) covering the title/abstract, introduction, methods (data sources, predictors, sample size, and statistics), results, and discussion.
  • TRIPOD+AI (2024) extends the requirements to machine learning and AI models.
Where it is used

Prediction modelling, clinical risk calculators, and AI/machine learning models.

Critical appraisal (checklists) 3

CASP

Critical Appraisal Skills Programme
What it is

A set of simple checklists for critically appraising studies with different designs. It is intended for education and the practice of evidence-based medicine.

What it assesses

Study validity, results, and applicability, assessed through a series of questions answered yes / no / cannot tell.

Structure / domains
  • Separate checklists for systematic reviews, RCTs, cohort, case–control, qualitative, diagnostic, and economic studies, and clinical prediction rules.
Where it is used

Critical appraisal training, journal clubs, and rapid appraisal in systematic reviews.

JBI

JBI (Joanna Briggs Institute) Critical Appraisal Tools
What it is

A family of critical appraisal checklists from the Joanna Briggs Institute covering a wide range of designs, including qualitative and prevalence studies.

What it assesses

Methodological quality and risk of bias of the studies being included.

Structure / domains
  • Separate tools for RCTs, quasi-experimental, cohort, case–control, analytical and descriptive cross-sectional studies, case series, case reports, qualitative studies, prevalence studies, diagnostic accuracy studies, economic evaluations, and text/opinion.
Where it is used

Systematic reviews using JBI methodology (including qualitative and mixed-methods reviews); widely used in nursing and public health.

MMAT

Mixed Methods Appraisal Tool, 2018 version
What it is

A single tool for critically appraising different study types within one mixed review: qualitative, quantitative, and mixed-methods studies.

What it assesses

Methodological quality of heterogeneous studies within a common framework.

Structure / domains
  • 2 screening questions + 5 criteria for each of five categories: qualitative, randomised, non-randomised quantitative, quantitative descriptive, and mixed-methods studies.
Where it is used

Mixed methods systematic reviews, where studies with different designs need to be assessed consistently.

Pragmatism of the design 1

PRECIS-2

PRagmatic-Explanatory Continuum Indicator Summary 2, 2015
What it is

A tool for planning and characterising trial design along a pragmatic ↔ explanatory continuum, rather than assessing risk of bias. It helps assess how applicable the results will be in real-world practice.

What it assesses

The degree of pragmatism of a trial design across 9 domains, each rated 1–5 and plotted on the PRECIS-2 wheel.

Structure / domains
  • Eligibility, recruitment, setting, organisation, flexibility of intervention delivery, flexibility of adherence, follow-up, relevance of the primary outcome, and primary analysis.
Where it is used

Clinical trial design; choosing between explanatory and pragmatic approaches; assessment of external validity.